miRBase entry: cja-mir-513c-1

Stem-loop cja-mir-513c-1

Accession

MI0031846

Description

Callithrix jacchus cja-mir-513c-1 precursor miRNA

Sequence

gggaugccacauucagccauucagcgugcagugccuUUCUCAAGAAGGUGGCAUUCAUgugagcuaaaacaugaaugucgccuuuuugagaagaguaauguacagcauguacugcgcaugugguguccc
((((((((((((...((....(((((((((.(((.(((((((((((((((((((((((((........))))))))))))))))))))))))).))).))))).)).))....))..))))))))))))

Structure

            uca  cauu  -  -     g   c                         gag 
gggaugccacau   gc    ca gc gugca ugc uUUCUCAAGAAGGUGGCAUUCAUgu   c
||||||||||||   ||    || || ||||| ||| |||||||||||||||||||||||||    
cccuguggugua   cg    gu cg caugu aug gaagaguuuuuccgcuguaaguaca   u
            -cg  ucau  a  a     a   a                         aaa

Annotation confidence Not enough data

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Genome context

chrX: 134414870-134414998 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-513c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-513c-5p

Accession	MIMAT0039335
Description	Callithrix jacchus cja-miR-513c-5p mature miRNA
Sequence	37 - UUCUCAAGAAGGUGGCAUUCAU - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857