Stem-loop cja-mir-548e

Accession

MI0031850

Description

Callithrix jacchus cja-mir-548e precursor miRNA

Sequence

guggugagguaugcugcaugaaacaccucucucaugauguuaggcugaugcAAAAGUAAUCACCGUUUUUGCCauuaaaaauaauagcaaaaacggugauucuuuugcaccaaccuauacguuauuguaacaaaguuguaaaauguacccacaguuuacuuuucuac
((((.((((((.(((((((((..........)))))....((((.((.((((((((.(((((((((((((((.((((....)))).))))))))))))))))))))))).)).))))((((((.(((((((...)))))))))))))....)))).)))))).))))

Structure

    u      u    ----------caugaaacaccucucucaugaugu    c  a        U               C    a 
gugg gaggua gcug                                  uagg ug ugcAAAAG AAUCACCGUUUUUGC auua a
|||| |||||| ||||                                  |||| || |||||||| ||||||||||||||| ||||  
cauc uuucau ugac                                  aucc ac acguuuuc uuaguggcaaaaacg uaau a
    u      u    acccauguaaaauguugaaacaauguuauugcau    a  c        -               a    a 

Annotation confidence Not enough data

Genome context

chr3: 108285563-108285729 [-]

Mature cja-miR-548e

• Accession: MIMAT0039337
• Description: Callithrix jacchus cja-miR-548e mature miRNA
• Sequence: 52 - AAAAGUAAUCACCGUUUUUGCC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857