Stem-loop cja-mir-181a-2

Accession

MI0031859

Description

Callithrix jacchus cja-mir-181a-2 precursor miRNA

Sequence

175090 reads, 16757.0 reads per million, 1 experiments

gaggacuccaaggAACAUUCAACGCUGUCGGUGAGUUugggauuugaaaaaaaACCACUGACCGUUGACUGUACCuugggguccuu
(((((((((((((.(((.((((((..(((((((.((((.............))))))))))))))))).))).)))))))))))))

Structure

             A   U      CU       A    gggau 
gaggacuccaagg ACA UCAACG  GUCGGUG GUUu     u
||||||||||||| ||| ||||||  ||||||| ||||     u
uuccugggguuCC UGU AGUUGC  CAGUCAC CAaa     g
             A   C      --       -    aaaaa 

Annotation confidence High

Genome context

ref|NC_071442.1|: 170353148-170353233 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-181a-2

Mature cja-miR-181a-5p

• Accession: MIMAT0039345
• Description: Callithrix jacchus cja-miR-181a-5p mature miRNA
• Sequence: 14 - AACAUUCAACGCUGUCGGUGAGUU - 37
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-181a-2-3p

• Accession: MIMAT0061513
• Description: Callithrix jacchus cja-miR-181a-2-3p mature miRNA
• Sequence: 54 - ACCACUGACCGUUGACUGUACC - 75
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596