Stem-loop cja-mir-181b-1

Accession

MI0031860

Description

Callithrix jacchus cja-mir-181b-1 precursor miRNA

Sequence

46202 reads, 4422.0 reads per million, 1 experiments

ggucacaaucAACAUUCAUUGCUGUCGGUGGGUUgaacuguguggacaagCUCACUGAACAAUGAAUGCAAcuguggcc
(((((((.....(((((((((...((((((((((....(((....))))))))))))).)))))))))....)))))))

Structure

       aucAA         CUG          gaac   g 
ggucaca     CAUUCAUUG   UCGGUGGGUU    ugu u
|||||||     |||||||||   ||||||||||    |||  
ccggugu     GUAAGUAAC   AGUCACUCga    aca g
       -cAAC         --A          ----   g 

Annotation confidence High

Genome context

ref|NC_071460.1|: 21952713-21952791 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-181b-1

Mature cja-miR-181b-5p

• Accession: MIMAT0039346
• Description: Callithrix jacchus cja-miR-181b-5p mature miRNA
• Sequence: 11 - AACAUUCAUUGCUGUCGGUGGGUU - 34
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-181b-1-3p

• Accession: MIMAT0061514
• Description: Callithrix jacchus cja-miR-181b-1-3p mature miRNA
• Sequence: 51 - CUCACUGAACAAUGAAUGCAA - 71
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596