miRBase entry: cja-mir-193a

Stem-loop cja-mir-193a


Accession
MI0031864
Description
Callithrix jacchus cja-mir-193a precursor miRNA


Sequence

406 reads, 39.0 reads per million, 1 experiments
guggucccagaaucgggguuuugagggcgagaugaguuuauuuuuuauccAACUGGCCCUCAAAGUCCCGCUuuuggggucau
((((((((((((.(((((((((((((((.((.((.((.........)).)).)).))))))))))))))).))))))))))))

Structure
            u               g  a  a  uua 
guggucccagaa cgggguuuugagggc ag ug gu   u
|||||||||||| ||||||||||||||| || || ||   u
uacugggguuuU GCCCUGAAACUCCCG UC Ac ua   u
            C               G  A  c  uuu 


Annotation confidence Not enough data
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Genome context
ref|NC_071453.1|: 12478442-12478524 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cja-mir-193a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-193a-3p

Accession MIMAT0039349
Description Callithrix jacchus cja-miR-193a-3p mature miRNA
Sequence 51 - AACUGGCCCUCAAAGUCCCGCU - 72
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857

  2. PubMed ID: 28640911
    Evolution of microRNA in primates
    McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
    PLoS One (2017) 12:e0176596