miRBase entry: cja-mir-154

Stem-loop cja-mir-154

Accession

MI0031871

Description

Callithrix jacchus cja-mir-154 precursor miRNA

Sequence

ugguacuugaagauagguuauccguguugccuucgcuuuacuugugacgAAUCAUACGCGGUUGACCUAUUuuccagugcca
(((((((.((((((((((((.((((((((.(.((((.......)))).)...)).)))))).)))))))))))).)))))))

Structure

       u            u      -  --c u    uu 
ugguacu gaagauagguua ccgugu ug   c ucgc  u
||||||| |||||||||||| |||||| ||   | ||||  a
accguga cuuUUAUCCAGU GGCGCA AC   g agug  c
       c            U      U  UAA c    uu

Annotation confidence Not enough data

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Genome context

chr10: 126977434-126977515 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cja-mir-154

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-154

Accession	MIMAT0039357
Description	Callithrix jacchus cja-miR-154 mature miRNA
Sequence	50 - AAUCAUACGCGGUUGACCUAUU - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857