miRBase entry: cja-mir-154

Stem-loop cja-mir-154


Accession
MI0031871
Description
Callithrix jacchus cja-mir-154 precursor miRNA


Sequence


ugguacuugaagauagguuauccguguugccuucgcuuuacuugugacgAAUCAUACGCGGUUGACCUAUUuuccagugcca
(((((((.((((((((((((.((((((((.(.((((.......)))).)...)).)))))).)))))))))))).)))))))

Structure
       u            u      -  --c u    uu 
ugguacu gaagauagguua ccgugu ug   c ucgc  u
||||||| |||||||||||| |||||| ||   | ||||  a
accguga cuuUUAUCCAGU GGCGCA AC   g agug  c
       c            U      U  UAA c    uu 


Annotation confidence Not enough data
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Genome context
ref|NC_071451.1|: 131874485-131874566 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from cja-mir-154
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-154-3p

Accession MIMAT0039357
Description Callithrix jacchus cja-miR-154-3p mature miRNA
Sequence 50 - AAUCAUACGCGGUUGACCUAUU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857