Stem-loop cja-mir-652a

Accession

MI0031872

Description

Callithrix jacchus cja-mir-652a precursor miRNA

Sequence

2592 reads, 248.0 reads per million, 1 experiments

ggcuaugcacugcACAACCCUAGGAGAGGGUGCCAUUCAcauagacuauaauugAAUGGCGCCACUAGGGUUGUGcagugcacaacc
((...((((((((((((((((((.....(((((((((((..((.....))..))))))))))).))))))))))))))))))...))

Structure

  cua                  GAGAG           ca  g 
gg   ugcacugcACAACCCUAG     GGUGCCAUUCA  ua a
||   ||||||||||||||||||     |||||||||||  || c
cc   acgugacGUGUUGGGAUC     CCGCGGUAAgu  au u
  aac                  ----A           ua  a 

Annotation confidence High

Genome context

ref|NC_071464.1|: 102562378-102562464 [+]

Mature cja-miR-652a-5p

• Accession: MIMAT0061515
• Description: Callithrix jacchus cja-miR-652a-5p mature miRNA
• Sequence: 14 - ACAACCCUAGGAGAGGGUGCCAUUCA - 39
• Evidence: experimental ; Illumina [1]

Mature cja-miR-652a-3p

• Accession: MIMAT0039358
• Description: Callithrix jacchus cja-miR-652a-3p mature miRNA
• Sequence: 55 - AAUGGCGCCACUAGGGUUGUG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857