Stem-loop cja-mir-199-1

Accession

MI0031875

Description

Callithrix jacchus cja-mir-199-1 precursor miRNA

Sequence

gggggcgccugcgggauggacagccggccccgccaacccaguguucagacuaccuguucaggaggccgucaauguguACAGUAGUCUGCACAUUGGUUaggcugggcuugggcaagcggcgcgucgagacaggcccccc
(((((.((((((..(((((...((((((((.(((...(((((((.((((((((.(((.((..............)).))))))))))).)))))))...))).)))))..)))......).))))..).))))))))))

Structure

     c     - gg    - ---aca   --     c   aac       u        c   u  ggaggc 
ggggg gccug c  gaug g      gcc  ggccc gcc   ccagugu cagacuac ugu ca      c
||||| ||||| |  |||| |      |||  ||||| |||   ||||||| |||||||| ||| ||       
ccccc cggac g  cugc c      cgg  ucggg cgg   GGUUACA GUCUGAUG ACA gu      g
     -     a ag    g ggcgaa   gu     u   aUU       C        -   u  guaacu 

Annotation confidence Not enough data

Genome context

chr22: 10238994-10239132 [-]

Mature cja-miR-199

• Accession: MIMAT0039361
• Description: Callithrix jacchus cja-miR-199 mature miRNA
• Sequence: 78 - ACAGUAGUCUGCACAUUGGUU - 98
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596