Stem-loop cja-mir-103a-1

Accession

MI0031884

Description

Callithrix jacchus cja-mir-103a-1 precursor miRNA

Sequence

158238 reads, 15144.0 reads per million, 1 experiments

ccccaccucagcagagcugcgucuuugugcuuucAGCUUCUUUACAGUGCUGCCUUGuagcauucaggucaAGCAGCAUUGUACAGGGCUAUGAaagaaccaagaaugggcugcccuugggg
(((((.....(((..(((...((((.((.(((((((((.((.(((((((((((.(((.(.(.....).))))))))))))))).)))))..)))))).)).))))...))))))...)))))

Structure

     ccuca   ga   gcg    u  g      --   U  U           C   u g a 
cccca     gca  gcu   ucuu gu cuuucA  GCU CU UACAGUGCUGC UUG a c u
|||||     |||  |||   |||| || ||||||  ||| || ||||||||||| ||| | | u
ggggu     cgu  cgg   agaa ca gaaAGU  CGG GA AUGUUACGACG Aac u g c
     --ucc   --   gua    c  a      AU   -  C           -   - g a 

Annotation confidence Medium

Genome context

ref|NC_071446.1|: 9357786-9357907 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-103a-1

Mature cja-miR-103a-1-5p

• Accession: MIMAT0061517
• Description: Callithrix jacchus cja-miR-103a-1-5p mature miRNA
• Sequence: 35 - AGCUUCUUUACAGUGCUGCCUUG - 57
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-103a-3p

• Accession: MIMAT0039369
• Description: Callithrix jacchus cja-miR-103a-3p mature miRNA
• Sequence: 72 - AGCAGCAUUGUACAGGGCUAUGA - 94
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596