Stem-loop cja-mir-222-1

Accession

MI0031888

Description

Callithrix jacchus cja-mir-222-1 precursor miRNA

Sequence

20413 reads, 1954.0 reads per million, 1 experiments

gcugccagaagguguggguacccucaauGGCUCAGUAGCCAGUGUAGAUCcugucuuuuguaaucaguAGCUACAUCUGGCUACUGGGUCUcugauggcaucuuuuagcuucugcuucagu
((((.((((((.((.((((.((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).)).))))..)).))))))...))))

Structure

    --c      g  -u    a  c   au              -     AUC   ucuu 
gcug   cagaag ug  gggu cc uca  GGCUCAGUAGCCAG UGUAG   cug    u
||||   |||||| ||  |||| || |||  |||||||||||||| |||||   |||    u
ugac   gucuuc au  ucua gg agu  CUGGGUCAUCGGUC ACAUC   gac    g
    uuc      g  uu    c  u   cU              U     GAu   uaau 

Annotation confidence High

Genome context

ref|NC_071464.1|: 45130666-45130786 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-222-1

Mature cja-miR-222-1-5p

• Accession: MIMAT0061520
• Description: Callithrix jacchus cja-miR-222-1-5p mature miRNA
• Sequence: 29 - GGCUCAGUAGCCAGUGUAGAUC - 50
• Evidence: experimental ; Illumina [1]

Mature cja-miR-222-3p

• Accession: MIMAT0039370
• Description: Callithrix jacchus cja-miR-222-3p mature miRNA
• Sequence: 69 - AGCUACAUCUGGCUACUGGGUCU - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596