Stem-loop cja-mir-31

Accession

MI0031890

Description

Callithrix jacchus cja-mir-31 precursor miRNA

Sequence

2728 reads, 261.0 reads per million, 1 experiments

uuggaacuggagaggAGGCAAGAUGCUGGCAUAGCUGUugaacugggaaccUGCUAUGCCAACAUAUUGCCAUCuuuccugucuga
(((((.(.(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).))))))).))))))

Structure

     a u       A     G   C         -U   gaa 
uugga c ggagagg GGCAA AUG UGGCAUAGC  GUu   c
||||| | ||||||| ||||| ||| |||||||||  |||    
agucu g ccuuuCU CCGUU UAC ACCGUAUCG  caa   u
     - u       A     A   A         Uc   ggg 

Annotation confidence High

Genome context

ref|NC_071442.1|: 125531501-125531586 [-]

Mature cja-miR-31-5p

• Accession: MIMAT0039372
• Description: Callithrix jacchus cja-miR-31-5p mature miRNA
• Sequence: 16 - AGGCAAGAUGCUGGCAUAGCUGU - 38
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-31-3p

• Accession: MIMAT0061522
• Description: Callithrix jacchus cja-miR-31-3p mature miRNA
• Sequence: 52 - UGCUAUGCCAACAUAUUGCCAUC - 74
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596