Stem-loop cja-mir-421

Accession

MI0031896

Description

Callithrix jacchus cja-mir-421 precursor miRNA

Sequence

2099 reads, 201.0 reads per million, 1 experiments

gugccuaauccggugcacauuguaggcCUCAUUAAAUGUUUGUUGAAUGAaaaaaugaaucAUCAACAGACAUUAAUUGGGCGccugcucugugaucuccaugggcuc
..(((((....((..((((..((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..))))..))...)))))..

Structure

gu     aucc  ug    uu      -    UUA            A   aaa 
  gccua    gg  caca  guaggc CUCA   AAUGUUUGUUGA UGA   a
  |||||    ||  ||||  |||||| ||||   |||||||||||| |||   a
  cgggu    uc  gugu  cguccG GGGU   UUACAGACAACU Acu   u
cu     -acc  ua    cu      C    UAA            -   aag 

Annotation confidence High

Genome context

ref|NC_071464.1|: 68669290-68669397 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-421

Mature cja-miR-421-5p

• Accession: MIMAT0061526
• Description: Callithrix jacchus cja-miR-421-5p mature miRNA
• Sequence: 28 - CUCAUUAAAUGUUUGUUGAAUGA - 50
• Evidence: experimental ; Illumina [1]

Mature cja-miR-421-3p

• Accession: MIMAT0039378
• Description: Callithrix jacchus cja-miR-421-3p mature miRNA
• Sequence: 62 - AUCAACAGACAUUAAUUGGGCG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857