Stem-loop cja-mir-2355

Accession

MI0031906

Description

Callithrix jacchus cja-mir-2355 precursor miRNA

Sequence

204 reads, 20.0 reads per million, 1 experiments

cauuggcccuuugagcuacauucacgugcauagaaaauaacauugucagacgugucAUCCCCAGAUACAAUGGACAAUaugcuauuauaauuguauggcAUUGUCCUUGCUGUUUGGAGAUAauacugcugacuuuauuccucucauacaugugaaugcggcuguggggaauacgug
......((((...((((.((((((((((.(((((.(((((....(((((..((((.(((.((((((((((.(((((..(((((((.........))))))))))))))).))))))).))).))))..))))).)))))..))).)).)))))))))).))))..))))........

Structure

--cauugg    uug    a          c  -   -a     cauu     ac    c   C       -   U     AU       uau 
        cccu   agcu cauucacgug au aga  aauaa    gucag  gugu AUC CCAGAUA CAA GGACA  augcuau   a
        ||||   |||| |||||||||| || |||  |||||    |||||  |||| ||| ||||||| ||| |||||  |||||||   a
        gggg   ucgg guaaguguac ua ucu  uuauu    caguc  caua UAG GGUUUGU GUU CCUGU  UAcggua   u
gugcauaa    -ug    c          a  c   cc     ---u     gu    A   A       C   -     --       ugu 

Annotation confidence High

Genome context

ref|NC_071447.1|: 125017423-125017599 [-]

Mature cja-miR-2355-5p

• Accession: MIMAT0061528
• Description: Callithrix jacchus cja-miR-2355-5p mature miRNA
• Sequence: 57 - AUCCCCAGAUACAAUGGACAAU - 78
• Evidence: experimental ; Illumina [1]

Mature cja-miR-2355-3p

• Accession: MIMAT0039387
• Description: Callithrix jacchus cja-miR-2355-3p mature miRNA
• Sequence: 100 - AUUGUCCUUGCUGUUUGGAGAUA - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857