Stem-loop cja-mir-20b

Accession

MI0031908

Description

Callithrix jacchus cja-mir-20b precursor miRNA

Literature search

1 open access papers mention cja-mir-20b
(2 sentences)

Sequence

9 reads, 1.0 reads per million, 1 experiments

guggauaagauuggguccuaguaguacCAAAGUGCUCAUAGUGCAGGUAGuuuuggcaugacucuacuguagugugggcacuucuaguacucuuggauaacaaaucucuuguuggc
((.((((((((((.((((.((.(((((..(((((((((((.(((((..((((.......))))...))))).)))))))))))...))))))).))))..)))...))))))).))

Structure

  g       ---   -g    u  u     -CA           G     -GU    uu 
gu gauaaga   uug  gucc ag aguac   AAGUGCUCAUA UGCAG   AGuu  g
|| |||||||   |||  |||| || |||||   ||||||||||| |||||   ||||  g
cg uuguucu   aac  uagg uc ucaug   uucacgggugu auguc   ucag  c
  g       cua   aa    u  -     auc           g     auc    ua 

Annotation confidence Not enough data

Genome context

ref|NC_071464.1|: 125646749-125646864 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cja-mir-20b

Mature cja-miR-20b-5p

• Accession: MIMAT0039389
• Description: Callithrix jacchus cja-miR-20b-5p mature miRNA
• Sequence: 28 - CAAAGUGCUCAUAGUGCAGGUAG - 50
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596