Stem-loop cja-mir-93

Accession

MI0031909

Description

Callithrix jacchus cja-mir-93 precursor miRNA

Literature search

1 open access papers mention cja-mir-93
(2 sentences)

Sequence

27636 reads, 2645.0 reads per million, 1 experiments

guccugggggcucCAAAGUGCUGUUCGUGCAGGUAGugugauuacccaaccuACUGCUGAGCUAGCACUUCCCGAgcccccgggac
(((((((((((((..((((((((((((.((((.(((.((.........)))))))))))))).)))))))...)))))))))))))

Structure

             -CA       -     U    G   u  gau 
guccugggggcuc   AAGUGCU GUUCG GCAG UAG gu   u
|||||||||||||   ||||||| ||||| |||| ||| ||   a
cagggcccccgAG   UUCACGA CGAGU CGUC Auc ca   c
             CCC       U     -    -   -  acc 

Annotation confidence High

Genome context

ref|NC_071443.1|: 11550782-11550867 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cja-mir-93

Mature cja-miR-93-5p

• Accession: MIMAT0039390
• Description: Callithrix jacchus cja-miR-93-5p mature miRNA
• Sequence: 14 - CAAAGUGCUGUUCGUGCAGGUAG - 36
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-93-3p

• Accession: MIMAT0061530
• Description: Callithrix jacchus cja-miR-93-3p mature miRNA
• Sequence: 53 - ACUGCUGAGCUAGCACUUCCCGA - 75
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596