Stem-loop cja-mir-17a

Accession

MI0031910

Description

Callithrix jacchus cja-mir-17a precursor miRNA

Literature search

2 open access papers mention cja-mir-17a
(24 sentences)

Sequence

50374 reads, 4821.0 reads per million, 1 experiments

auaauguCAAAGUGCUUACAGUGCAGGUAGugauaugugcaucuACUGCAGUGAAGGCACUUGUAGcauuau
(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))

Structure

       -CA        A  G     G   -  au 
auaaugu   AAGUGCUU CA UGCAG UAG ug  a
|||||||   |||||||| || ||||| ||| ||  u
uauuacG   UUCACGGA GU ACGUC Auc ac  g
       AUG        A  G     -   u  gu 

Annotation confidence High

Genome context

ref|NC_071442.1|: 6486841-6486912 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cja-mir-17a

Mature cja-miR-17a-5p

• Accession: MIMAT0039391
• Description: Callithrix jacchus cja-miR-17a-5p mature miRNA
• Sequence: 8 - CAAAGUGCUUACAGUGCAGGUAG - 30
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-17a-3p

• Accession: MIMAT0061531
• Description: Callithrix jacchus cja-miR-17a-3p mature miRNA
• Sequence: 45 - ACUGCAGUGAAGGCACUUGUAG - 66
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596