Stem-loop cja-mir-191

Accession

MI0031911

Description

Callithrix jacchus cja-mir-191 precursor miRNA

Sequence

39659 reads, 3796.0 reads per million, 1 experiments

gccaacggcuggacagcgggCAACGGAAUCCCAAAAGCAGCUGuugucuccagagcauuccaGCUGCGCUUGGAUUUCGUCCCCugcucuuccgccugagc
((((..(((.(((.((((((..(((((((((.((..(((((((.(((.......)))...)))))))..)))))))))))..))))))..)))))))).))

Structure

  -  ac   u   -c      CA         C  AA       --u   cu 
gc ca  ggc gga  agcggg  ACGGAAUCC AA  GCAGCUG   ugu  c
|| ||  ||| |||  ||||||  ||||||||| ||  |||||||   |||  c
cg gu  ccg ccu  ucguCC  UGCUUUAGG UU  CGUCGac   acg  a
  a  --   -   uc      CC         -  CG       cuu   ag 

Annotation confidence High

Genome context

ref|NC_071456.1|: 25405015-25405115 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-191

Mature cja-miR-191-5p

• Accession: MIMAT0039392
• Description: Callithrix jacchus cja-miR-191-5p mature miRNA
• Sequence: 21 - CAACGGAAUCCCAAAAGCAGCUG - 43
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-191-3p

• Accession: MIMAT0061532
• Description: Callithrix jacchus cja-miR-191-3p mature miRNA
• Sequence: 63 - GCUGCGCUUGGAUUUCGUCCCC - 84
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596