Stem-loop cja-mir-130b

Accession

MI0031916

Description

Callithrix jacchus cja-mir-130b precursor miRNA

Sequence

16459 reads, 1575.0 reads per million, 1 experiments

uggcaggccugccugauACUCUUUCCCUGUUGCACUACUgugggccacuggaaagCAGUGCAAUGAUGAAAGGGCAUcggucagguaccgccugcua
((((((((.((((((((.(((((((..(((((((((.((..((....))....)).)))))))))..))))))).....))))))))..))))))))

Structure

        -c        ----A       CC         A  --gu  g 
uggcaggc  ugccugau     CUCUUUC  UGUUGCACU CU    gg c
||||||||  ||||||||     |||||||  ||||||||| ||    ||  
aucguccg  auggacug     GGGAAAG  GUAACGUGA ga    uc c
        cc        gcUAC       UA         C  aagg  a 

Annotation confidence High

Genome context

ref|NC_071442.1|: 190723200-190723296 [+]

Mature cja-miR-130b-5p

• Accession: MIMAT0061533
• Description: Callithrix jacchus cja-miR-130b-5p mature miRNA
• Sequence: 18 - ACUCUUUCCCUGUUGCACUACU - 39
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-130b-3p

• Accession: MIMAT0039397
• Description: Callithrix jacchus cja-miR-130b-3p mature miRNA
• Sequence: 56 - CAGUGCAAUGAUGAAAGGGCAU - 77
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596