Stem-loop cja-mir-1306

Accession

MI0031919

Description

Callithrix jacchus cja-mir-1306 precursor miRNA

Sequence

307 reads, 29.0 reads per million, 1 experiments

gucuccaCCACCUCCCCUGCAAACGUCCAguggugcagagguaaugGACGUUGGCUCUGGUGGUGAUGgac
...((((.((((.((...((.((((((((.((.(.....).)).)))))))).))...)).)))).)))).

Structure

guc    C    U  CCU  A        g  g g 
   ucca CACC CC   GC AACGUCCA ug u c
   |||| |||| ||   || |||||||| || | a
   agGU GUGG GG   CG UUGCAGgu au g g
--c    A    U  UCU  G        a  g a 

Annotation confidence High

Genome context

ref|NC_071442.1|: 209304912-209304982 [+]

Mature cja-miR-1306-5p

• Accession: MIMAT0039400
• Description: Callithrix jacchus cja-miR-1306-5p mature miRNA
• Sequence: 8 - CCACCUCCCCUGCAAACGUCCA - 29
• Evidence: experimental ; Illumina [1]

Mature cja-miR-1306-3p

• Accession: MIMAT0061535
• Description: Callithrix jacchus cja-miR-1306-3p mature miRNA
• Sequence: 47 - GACGUUGGCUCUGGUGGUGAUG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857