Stem-loop cja-mir-374a

Accession

MI0031926

Description

Callithrix jacchus cja-mir-374a precursor miRNA

Sequence

11156 reads, 1068.0 reads per million, 1 experiments

ggaaagaaauuuuacaucggccaUUAUAAUACAACCUGAUAAGUGuuacagcaCUUAUCAGAUUGUAUUGUAAUUgucuguguauaugccugucu
(((.((..((..(((((.(((.((((((((((((.(((((((((((....))))))))))).)))))))))))).))).))))).))..)).)))

Structure

   a  aa  uu     c   c            C           u 
gga ag  au  uacau ggc aUUAUAAUACAA CUGAUAAGUGu a
||| ||  ||  ||||| ||| |||||||||||| |||||||||||  
ucu uc  ua  augug cug UAAUGUUAUGUU GACUAUUCacg c
   g  cg  -u     u   U            A           a 

Annotation confidence High

Genome context

ref|NC_071464.1|: 68734853-68734947 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-374a

Mature cja-miR-374a-5p

• Accession: MIMAT0061538
• Description: Callithrix jacchus cja-miR-374a-5p mature miRNA
• Sequence: 24 - UUAUAAUACAACCUGAUAAGUG - 45
• Evidence: experimental ; Illumina [1]

Mature cja-miR-374a-3p

• Accession: MIMAT0039407
• Description: Callithrix jacchus cja-miR-374a-3p mature miRNA
• Sequence: 54 - CUUAUCAGAUUGUAUUGUAAUU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857