Stem-loop cja-mir-345

Accession

MI0031932

Description

Callithrix jacchus cja-mir-345 precursor miRNA

Sequence

3357 reads, 321.0 reads per million, 1 experiments

caaacccuaggucuGCUGACUCCUAGUCCAGGGCUcgugauagcuggugUGCCCUGAAUGAGGAGUCUGGAggccuguguuug
(((((..(((((((.(.(((((((.((.((((((.(((........))).)))))).)).))))))).).))))))).)))))

Structure

     cc       G U       A  C      U   gau 
caaac  uaggucu C GACUCCU GU CAGGGC cgu   a
|||||  ||||||| | ||||||| || |||||| |||    
guuug  guccggA G CUGAGGA UA GUCCCG gug   g
     -u       G U       G  A      U   guc 

Annotation confidence High

Genome context

ref|NC_071451.1|: 131125107-131125189 [+]

Mature cja-miR-345-5p

• Accession: MIMAT0039412
• Description: Callithrix jacchus cja-miR-345-5p mature miRNA
• Sequence: 15 - GCUGACUCCUAGUCCAGGGCU - 35
• Evidence: experimental ; Illumina [1]

Mature cja-miR-345-3p

• Accession: MIMAT0061539
• Description: Callithrix jacchus cja-miR-345-3p mature miRNA
• Sequence: 50 - UGCCCUGAAUGAGGAGUCUGGA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857