Stem-loop cja-mir-887

Accession

MI0031936

Description

Callithrix jacchus cja-mir-887 precursor miRNA

Sequence

5364 reads, 513.0 reads per million, 1 experiments

gcccuggggugcagaACCUUGGGAGCCCUGUUAGACUcuggauuuuaaacuuggaGUGAACGGGCGCCAUCCCGAGGCUuugcauaggggc
(((((...(((((((.((((((((((((((((..(((((((.........))))))).)))))).))..)))))))).))))))).)))))

Structure

     ggg       A        --  -      AG       auu 
gcccu   gugcaga CCUUGGGA  GC CCUGUU  ACUcugg   u
|||||   ||||||| ||||||||  || ||||||  |||||||   u
cgggg   uacguuU GGAGCCCU  CG GGGCAA  UGagguu   a
     --a       C        AC  C      -G       caa 

Annotation confidence High

Genome context

ref|NC_071443.1|: 186031554-186031644 [-]

Mature cja-miR-887-5p

• Accession: MIMAT0039416
• Description: Callithrix jacchus cja-miR-887-5p mature miRNA
• Sequence: 16 - ACCUUGGGAGCCCUGUUAGACU - 37
• Evidence: experimental ; Illumina [2]

Mature cja-miR-887-3p

• Accession: MIMAT0039417
• Description: Callithrix jacchus cja-miR-887-3p mature miRNA
• Sequence: 56 - GUGAACGGGCGCCAUCCCGAGGCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596