Stem-loop cja-mir-33a

Accession

MI0031937

Description

Callithrix jacchus cja-mir-33a precursor miRNA

Sequence

9556 reads, 915.0 reads per million, 1 experiments

ccuggcgggcagcugugGUGCAUUGUAGUUGCAUUGCAuguucugguggcauccaugCAAUGUUUCCACAGUGCAUCAcagaggccugccugg
((.(((((((..((((((((((((((.(..((((((((((...((....))..))))))))))..).))))))))))))))..))))))).))

Structure

  u       ag              A UU          uuc  g 
cc ggcgggc  cugugGUGCAUUGU G  GCAUUGCAug   ug u
|| |||||||  |||||||||||||| |  ||||||||||   ||  
gg ccguccg  gacACUACGUGACA C  UGUAACguac   ac g
  u       ga              C UU          -cu  g 

Annotation confidence High

Genome context

ref|NC_071442.1|: 186967167-186967259 [-]

Mature cja-miR-33a-5p

• Accession: MIMAT0039418
• Description: Callithrix jacchus cja-miR-33a-5p mature miRNA
• Sequence: 18 - GUGCAUUGUAGUUGCAUUGCA - 38
• Evidence: experimental ; Illumina [1]

Mature cja-miR-33a-3p

• Accession: MIMAT0061540
• Description: Callithrix jacchus cja-miR-33a-3p mature miRNA
• Sequence: 58 - CAAUGUUUCCACAGUGCAUCA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857