Stem-loop cja-mir-20a

Accession

MI0031940

Description

Callithrix jacchus cja-mir-20a precursor miRNA

Literature search

1 open access papers mention cja-mir-20a
(3 sentences)

Sequence

75375 reads, 7214.0 reads per million, 1 experiments

cugaugugacagcuucuguagcacUAAAGUGCUUAUAGUGCAGGUAGuguuuaguuaucuACUGCAUUAUGAGCACUUAAAGUacugcuagcuguagaacuccag
(((..((.((((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).))))))...))..)))

Structure

   au  --g      ucu    c   -A                 G   uguu 
cug  gu   acagcu   guag acU  AAGUGCUUAUAGUGCAG UAG    u
|||  ||   ||||||   |||| |||  ||||||||||||||||| |||    a
gac  ca   ugucga   cguc UGA  UUCACGAGUAUUACGUC Auc    g
   cu  aga      --u    a   AA                 -   uauu 

Annotation confidence High

Genome context

ref|NC_071442.1|: 6487281-6487385 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cja-mir-20a

Mature cja-miR-20a-5p

• Accession: MIMAT0039421
• Description: Callithrix jacchus cja-miR-20a-5p mature miRNA
• Sequence: 25 - UAAAGUGCUUAUAGUGCAGGUAG - 47
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-20a-3p

• Accession: MIMAT0061541
• Description: Callithrix jacchus cja-miR-20a-3p mature miRNA
• Sequence: 61 - ACUGCAUUAUGAGCACUUAAAGU - 83
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596