Stem-loop cja-mir-365-1

Accession

MI0031949

Description

Callithrix jacchus cja-mir-365-1 precursor miRNA

Sequence

128 reads, 12.0 reads per million, 1 experiments

uaccgcagggaaaaugagggacuuuugggggcagauguguuuccauuccacuaucaUAAUGCCCCUAAAAAUCCUUAUugcucuugcagua
(((.((((((..((((((((..(((((((((((((((((.........))).)))....))))))))))).))))))))..)))))).)))

Structure

   c      aa        ac           ----   -   uuu 
uac gcaggg  aaugaggg  uuuugggggca    gau gug   c
||| ||||||  ||||||||  |||||||||||    ||| |||   c
aug cguucu  uUAUUCCU  AAAAUCCCCGU    cua cac   a
   a      cg        -A           AAUa   u   cuu 

Annotation confidence Not enough data

Genome context

ref|NC_071453.1|: 12472726-12472816 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-365-1

Mature cja-miR-365-3p

• Accession: MIMAT0039429
• Description: Callithrix jacchus cja-miR-365-3p mature miRNA
• Sequence: 57 - UAAUGCCCCUAAAAAUCCUUAU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857