Stem-loop cja-mir-140

Accession

MI0031952

Description

Callithrix jacchus cja-mir-140 precursor miRNA

Sequence

9382 reads, 898.0 reads per million, 1 experiments

gcccugugugugucucucucuguguccugcCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucuACCACAGGGUAGAACCACGGAcaggauaccgggacacccucugc
((...(.(.(((((((.....((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).)))))))).)))))))))...))

Structure

  ccu u u       ucucu        -  A             A       u  c  c 
gc   g g gugucuc     guguccug cC GUGGUUUUACCCU UGGUAGg ua gu  
||   | | |||||||     |||||||| || ||||||||||||| ||||||| || || a
cg   c c cacaggg     cauaggac GG CACCAAGAUGGGA ACCAucu gu cg  
  ucu - -       ----c        A  -             C       u  -  u 

Annotation confidence High

Genome context

ref|NC_071461.1|: 24155039-24155152 [+]

Mature cja-miR-140-5p

• Accession: MIMAT0061545
• Description: Callithrix jacchus cja-miR-140-5p mature miRNA
• Sequence: 31 - CAGUGGUUUUACCCUAUGGUAG - 52
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-140-3p

• Accession: MIMAT0039431
• Description: Callithrix jacchus cja-miR-140-3p mature miRNA
• Sequence: 71 - ACCACAGGGUAGAACCACGGA - 91
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596