Stem-loop cja-mir-660

Accession

MI0031953

Description

Callithrix jacchus cja-mir-660 precursor miRNA

Sequence

569 reads, 54.0 reads per million, 1 experiments

gcuccuucucccaUACCCAUUGCAUAUCGGAGUUGUgaauucucaaaacACCUCCUGUGUGCAUGGAUUACAggagggugagc
((((.((((((.....((((.((((((.((((.(((...........))).)))).))))))))))......)))))).))))

Structure

    c      -caUAC    U      C    U   gaau 
gcuc uucucc      CCAU GCAUAU GGAG UGU    u
|||| ||||||      |||| |||||| |||| |||    c
cgag gggagg      GGUA CGUGUG CCUC Aca    u
    u      ACAUUA    -      U    C   aaac 

Annotation confidence High

Genome context

ref|NC_071464.1|: 48754879-48754961 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cja-mir-660

Mature cja-miR-660-5p

• Accession: MIMAT0039432
• Description: Callithrix jacchus cja-miR-660-5p mature miRNA
• Sequence: 14 - UACCCAUUGCAUAUCGGAGUUGU - 36
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-660-3p

• Accession: MIMAT0061546
• Description: Callithrix jacchus cja-miR-660-3p mature miRNA
• Sequence: 50 - ACCUCCUGUGUGCAUGGAUUACA - 72
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596