Stem-loop cja-mir-29b-1

Accession

MI0031958

Description

Callithrix jacchus cja-mir-29b-1 precursor miRNA

Sequence

223938 reads, 21432.0 reads per million, 1 experiments

ucuucuucuggaagCUGGUUUCACAUGGUGGCUUAGAuuuuuccaucuuuguaucUAGCACCAUUUGAAAUCAGUGUUuuaggaguaaga
(((((((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).))))))))).))))

Structure

    -         -          C      G  U    uuuucc 
ucuu cuucuggaa gCUGGUUUCA AUGGUG CU AGAu      a
|||| ||||||||| |||||||||| |||||| || ||||       
agaa gaggauuUU UGACUAAAGU UACCAC GA Ucua      u
    u         G          U      -  -    uguuuc 

Annotation confidence High

Genome context

ref|NC_071460.1|: 31475029-31475118 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-29b-1

Mature cja-miR-29b-1-5p

• Accession: MIMAT0061547
• Description: Callithrix jacchus cja-miR-29b-1-5p mature miRNA
• Sequence: 15 - CUGGUUUCACAUGGUGGCUUAGA - 37
• Evidence: experimental ; Illumina [1]

Mature cja-miR-29b-3p

• Accession: MIMAT0039437
• Description: Callithrix jacchus cja-miR-29b-3p mature miRNA
• Sequence: 56 - UAGCACCAUUUGAAAUCAGUGUU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857