Stem-loop cja-mir-29c

Accession

MI0031960

Description

Callithrix jacchus cja-mir-29c precursor miRNA

Sequence

98888 reads, 9464.0 reads per million, 1 experiments

ucucuuacacaggcugACCGAUUUCUCCUGGUGUUCAGAgucuguuuuugucUAGCACCAUUUGAAAUCGGUUaugauguaggggg
.((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).)))))))).

Structure

u        -  ggc           UCC       C   gucu 
 cucuuaca ca   ugACCGAUUUC   UGGUGUU AGA    g
 |||||||| ||   |||||||||||   ||||||| |||    u
 ggggaugu gu   aUUGGCUAAAG   ACCACGA Ucu    u
g        a  ---           UUU       -   guuu 

Annotation confidence Medium

Genome context

ref|NC_071460.1|: 31474448-31474533 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-29c

Mature cja-miR-29c-5p

• Accession: MIMAT0061549
• Description: Callithrix jacchus cja-miR-29c-5p mature miRNA
• Sequence: 17 - ACCGAUUUCUCCUGGUGUUCAGA - 39
• Evidence: experimental ; Illumina [1]

Mature cja-miR-29c-3p

• Accession: MIMAT0039438
• Description: Callithrix jacchus cja-miR-29c-3p mature miRNA
• Sequence: 53 - UAGCACCAUUUGAAAUCGGUU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857