Stem-loop cja-mir-15b

Accession

MI0031961

Description

Callithrix jacchus cja-mir-15b precursor miRNA

Literature search

1 open access papers mention cja-mir-15b
(1 sentences)

Sequence

44689 reads, 4277.0 reads per million, 1 experiments

ugaggccuuaaaguacugUAGCAGCACAUCAUGGUUUACAuacuacagucaagaugCGAAUCAUUAUUUGCUGCUCUagaaauuuaaggaaauuca
((((.(((((((...(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))...)))))))...))))

Structure

    --g       gua   U       C  C       A   a  ac 
ugag   ccuuaaa   cug AGCAGCA AU AUGGUUU CAu cu  a
||||   |||||||   ||| ||||||| || ||||||| ||| ||  g
acuu   ggaauuu   gaU UCGUCGU UA UACUAAG gua ga  u
    aaa       aaa   C       U  U       C   -  ac 

Annotation confidence High

Genome context

ref|NC_071458.1|: 17950816-17950911 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-15b

Mature cja-miR-15b-5p

• Accession: MIMAT0039439
• Description: Callithrix jacchus cja-miR-15b-5p mature miRNA
• Sequence: 19 - UAGCAGCACAUCAUGGUUUACA - 40
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-15b-3p

• Accession: MIMAT0061550
• Description: Callithrix jacchus cja-miR-15b-3p mature miRNA
• Sequence: 57 - CGAAUCAUUAUUUGCUGCUCU - 77
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596