miRBase entry: cja-mir-15b

Stem-loop cja-mir-15b

Accession

MI0031961

Description

Callithrix jacchus cja-mir-15b precursor miRNA

Literature search

1 open access papers mention cja-mir-15b
(1 sentences)

Sequence

ugaggccuuaaaguacugUAGCAGCACAUCAUGGUUUACAuacuacagucaagaugcgaaucauuauuugcugcucuagaaauuuaaggaaauuca
((((.(((((((...(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))...)))))))...))))

Structure

    --g       gua   U       C  C       A   a  ac 
ugag   ccuuaaa   cug AGCAGCA AU AUGGUUU CAu cu  a
||||   |||||||   ||| ||||||| || ||||||| ||| ||  g
acuu   ggaauuu   gau ucgucgu ua uacuaag gua ga  u
    aaa       aaa   c       u  u       c   -  ac

Annotation confidence Not enough data

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Genome context

chr17: 16921311-16921406 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-15b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-15b

Accession	MIMAT0039439
Description	Callithrix jacchus cja-miR-15b mature miRNA
Sequence	19 - UAGCAGCACAUCAUGGUUUACA - 40
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857

PubMed ID: 28640911
Evolution of microRNA in primates
McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
PLoS One (2017) 12:e0176596