miRBase entry: cja-mir-16-2

Stem-loop cja-mir-16-2

Accession

MI0031962

Description

Callithrix jacchus cja-mir-16-2 precursor miRNA

Sequence

auucuuguuccacucUAGCAGCACGUAAAUAUUGGCGuagugaaauauauauuaaacaccaauauuacugugcugcuuuagugugacagggau
(((((((((.((((..(((((((((..((((((((.((.................)).))))))))..)))))))))..)))).)))))))))

Structure

         c    cU         UA        C  agugaaa 
auucuuguu cacu  AGCAGCACG  AAUAUUGG Gu       u
||||||||| ||||  |||||||||  |||||||| ||       a
uagggacag guga  ucgucgugu  uuauaacc ca       u
         u    uu         ca        a  aauuaua

Annotation confidence Not enough data

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Genome context

chr17: 16921164-16921256 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-16-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-16

Accession	MIMAT0039440
Description	Callithrix jacchus cja-miR-16 mature miRNA
Sequence	16 - UAGCAGCACGUAAAUAUUGGCG - 37
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857

PubMed ID: 28640911
Evolution of microRNA in primates
McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
PLoS One (2017) 12:e0176596