Stem-loop cja-mir-16-2

Accession

MI0031962

Description

Callithrix jacchus cja-mir-16-2 precursor miRNA

Sequence

192264 reads, 18401.0 reads per million, 1 experiments

auucuuguuccacucUAGCAGCACGUAAAUAUUGGCGuagugaaauauauauuaaacACCAAUAUUACUGUGCUGCUUUagugugacagggau
(((((((((.((((..(((((((((..((((((((.((.................)).))))))))..)))))))))..)))).)))))))))

Structure

         c    cU         UA        C  agugaaa 
auucuuguu cacu  AGCAGCACG  AAUAUUGG Gu       u
||||||||| ||||  |||||||||  |||||||| ||       a
uagggacag guga  UCGUCGUGU  UUAUAACC ca       u
         u    UU         CA        A  aauuaua 

Annotation confidence High

Genome context

ref|NC_071458.1|: 17950669-17950761 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-16-2

Mature cja-miR-16-5p

• Accession: MIMAT0039440
• Description: Callithrix jacchus cja-miR-16-5p mature miRNA
• Sequence: 16 - UAGCAGCACGUAAAUAUUGGCG - 37
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-16-2-3p

• Accession: MIMAT0061551
• Description: Callithrix jacchus cja-miR-16-2-3p mature miRNA
• Sequence: 58 - ACCAAUAUUACUGUGCUGCUUU - 79
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596