Stem-loop cja-mir-21

Accession

MI0031964

Description

Callithrix jacchus cja-mir-21 precursor miRNA

Sequence

2260927 reads, 216384.0 reads per million, 1 experiments

guaccaccuugucaggUAGCUUAUCAGACUGAUGUUGACuguugaaucucauggCAACAGCAGUCGAUGGGCUGUCugacauuuugguau
((((((...((((((((((((((((.(((((.(((((.((((.((...))))))))))).)))))))))))))))))))))...))))))

Structure

      ccu                A     A     A    u  a 
guacca   ugucaggUAGCUUAUC GACUG UGUUG Cugu ga  
||||||   |||||||||||||||| ||||| ||||| |||| || u
uauggu   acaguCUGUCGGGUAG CUGAC ACAAC ggua cu  
      uuu                -     G     -    -  c 

Annotation confidence High

Genome context

ref|NC_071446.1|: 90480458-90480547 [+]

Mature cja-miR-21-5p

• Accession: MIMAT0039441
• Description: Callithrix jacchus cja-miR-21-5p mature miRNA
• Sequence: 17 - UAGCUUAUCAGACUGAUGUUGAC - 39
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-21-3p

• Accession: MIMAT0061553
• Description: Callithrix jacchus cja-miR-21-3p mature miRNA
• Sequence: 55 - CAACAGCAGUCGAUGGGCUGUC - 76
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596