Stem-loop cja-mir-92a-2

Accession

MI0031978

Description

Callithrix jacchus cja-mir-92a-2 precursor miRNA

Sequence

11581 reads, 1108.0 reads per million, 1 experiments

gggaaaaucaaaccccuuucuacacAGGUUGGGAUCGGUUGCAAUGCUguguuucuguauggUAUUGCACUUGUCCCGGCCUGUugaguuugguggggauugugacc
........(((.((((...((..((((((((((((.(((.(((((((((((......)))))))))))))).))))))))))))..))......)))).))).....

Structure

gggaaaau   a    ---uuu  ac            C   U           uu 
        caa cccc      cu  acAGGUUGGGAU GGU GCAAUGCUgug  u
        ||| ||||      ||  |||||||||||| ||| |||||||||||   
        guu gggg      ga  UGUCCGGCCCUG UCA CGUUAUgguau  c
---ccagu   a    ugguuu  gu            U   -           gu 

Annotation confidence High

Genome context

ref|NC_071442.1|: 6487528-6487634 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cja-mir-92a-2

Mature cja-miR-92a-2-5p

• Accession: MIMAT0061556
• Description: Callithrix jacchus cja-miR-92a-2-5p mature miRNA
• Sequence: 26 - AGGUUGGGAUCGGUUGCAAUGCU - 48
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-92a-3p

• Accession: MIMAT0039454
• Description: Callithrix jacchus cja-miR-92a-3p mature miRNA
• Sequence: 63 - UAUUGCACUUGUCCCGGCCUGU - 84
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596