Stem-loop cja-mir-148a

Accession

MI0031985

Description

Callithrix jacchus cja-mir-148a precursor miRNA

Sequence

7116 reads, 681.0 reads per million, 1 experiments

ggucuuuugaggcAAAGUUCUGAGACACUCCGACUcugaguaugauagaagUCAGUGCACUACAGAACUUUGUcucuagaggcu
(((((((.((((((((((((((((.((((..(((((((.......))).))))))))..)).)))))))))))))).)))))))

Structure

       u              -  -A    CC    -   ag 
ggucuuu gaggcAAAGUUCUG AG  CACU  GACU cug  u
||||||| |||||||||||||| ||  ||||  |||| |||  a
ucggaga cucUGUUUCAAGAC UC  GUGA  CUga gau  u
       u              A  AC    --    a   ag 

Annotation confidence High

Genome context

ref|NC_071449.1|: 29445920-29446003 [+]

Mature cja-miR-148a-5p

• Accession: MIMAT0061557
• Description: Callithrix jacchus cja-miR-148a-5p mature miRNA
• Sequence: 14 - AAAGUUCUGAGACACUCCGACU - 35
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-148a-3p

• Accession: MIMAT0039461
• Description: Callithrix jacchus cja-miR-148a-3p mature miRNA
• Sequence: 52 - UCAGUGCACUACAGAACUUUGU - 73
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596