Stem-loop cja-mir-148b

Accession

MI0031986

Description

Callithrix jacchus cja-mir-148b precursor miRNA

Sequence

21957 reads, 2101.0 reads per million, 1 experiments

agcacuauuagcauuugagguGAAGUUCUGUUUUACACUCAGGCUguggcucucugaaagUCAGUGCAUCACAGAACUUUGUcucgaaagcuuucuagcagcu
(((.(((..(((.((((((((((((((((((..(.((((..((((.............)))))))).)..)))))))))))))))))).)))...)))..)))

Structure

   -a   -uu   a                  UU A    CA    guggc 
agc  cua   agc uuugagguGAAGUUCUGU  U CACU  GGCU     u
|||  |||   ||| ||||||||||||||||||  | ||||  ||||     c
ucg  gau   ucg aagcucUGUUUCAAGACA  A GUGA  CUga     u
   ac   cuu   a                  CU C    --    aaguc 

Annotation confidence High

Genome context

ref|NC_071450.1|: 61648658-61648760 [-]

Mature cja-miR-148b-5p

• Accession: MIMAT0061558
• Description: Callithrix jacchus cja-miR-148b-5p mature miRNA
• Sequence: 22 - GAAGUUCUGUUUUACACUCAGGCU - 45
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-148b-3p

• Accession: MIMAT0039462
• Description: Callithrix jacchus cja-miR-148b-3p mature miRNA
• Sequence: 61 - UCAGUGCAUCACAGAACUUUGU - 82
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596