Stem-loop cja-mir-342

Accession

MI0031997

Description

Callithrix jacchus cja-mir-342 precursor miRNA

Sequence

7568 reads, 724.0 reads per million, 1 experiments

gggcucaaggugAGGGGUGCUAUCUGUGAUUGAGGgacaugguuaauggaauugUCUCACACAGAAAUCGCACCCGUCaccuuggccu
((((.((((((((.((((((..((((((..(((((.((((.....)))....).)))))))))))....)))))).))))))))))))

Structure

    u        G      --UA      AU     g ----   g 
gggc caaggugA GGGUGC    UCUGUG  UGAGG a    cau g
|||| |||||||| ||||||    ||||||  ||||| |    ||| u
uccg guuccaCU CCCACG    AGACAC  ACUCU u    gua u
    -        G      CUAA      --     g uaag   a 

Annotation confidence High

Genome context

ref|NC_071451.1|: 130940178-130940265 [+]

Mature cja-miR-342-5p

• Accession: MIMAT0061559
• Description: Callithrix jacchus cja-miR-342-5p mature miRNA
• Sequence: 13 - AGGGGUGCUAUCUGUGAUUGAGG - 35
• Evidence: experimental ; Illumina [1]

Mature cja-miR-342-3p

• Accession: MIMAT0039473
• Description: Callithrix jacchus cja-miR-342-3p mature miRNA
• Sequence: 55 - UCUCACACAGAAAUCGCACCCGUC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857