Stem-loop cja-mir-146b

Accession

MI0032002

Description

Callithrix jacchus cja-mir-146b precursor miRNA

Sequence

164880 reads, 15780.0 reads per million, 1 experiments

ccuggcacUGAGAACUGAAUUCCAUAGGCUgugagcucuagcgaauGCCCUAUGGACUCAGUUCUGGUgcccgg
((.((((((.((((((((..((((((((.(((..((....))..))).)))))))).)))))))))))))).))

Structure

  u      G        AU        C   ga  u 
cc ggcacU AGAACUGA  UCCAUAGG Ugu  gc c
|| |||||| ||||||||  |||||||| |||  ||  
gg ccgUGG UCUUGACU  AGGUAUCC Gua  cg u
  c      -        -C        C   ag  a 

Annotation confidence High

Genome context

ref|NC_071453.1|: 92089088-92089161 [+]

Mature cja-miR-146b-5p

• Accession: MIMAT0039477
• Description: Callithrix jacchus cja-miR-146b-5p mature miRNA
• Sequence: 9 - UGAGAACUGAAUUCCAUAGGCU - 30
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-146b-3p

• Accession: MIMAT0061561
• Description: Callithrix jacchus cja-miR-146b-3p mature miRNA
• Sequence: 47 - GCCCUAUGGACUCAGUUCUGGU - 68
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596