Stem-loop cja-mir-146a

Accession

MI0032003

Description

Callithrix jacchus cja-mir-146a precursor miRNA

Literature search

1 open access papers mention cja-mir-146a
(1 sentences)

Sequence

355926 reads, 34064.0 reads per million, 1 experiments

guauccucagcuuUGAGAACUGAAUUCCAUGGGUUgugucagugucagaCCUGUGAAAUUCAGUUCUUCAgcugggauau
((((((.(((((..((((((((((((.((((((((.((.......)))))))))).)))))))))))).)))))))))))

Structure

      u     uU            C        g  uc 
guaucc cagcu  GAGAACUGAAUU CAUGGGUU ug  a
|||||| |||||  |||||||||||| |||||||| ||  g
uauagg gucgA  UUCUUGACUUAA GUGUCCag ac  u
      -     -C            A        -  ug 

Annotation confidence High

Genome context

ref|NC_071443.1|: 21401464-21401543 [+]

Mature cja-miR-146a-5p

• Accession: MIMAT0039478
• Description: Callithrix jacchus cja-miR-146a-5p mature miRNA
• Sequence: 14 - UGAGAACUGAAUUCCAUGGGUU - 35
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-146a-3p

• Accession: MIMAT0061562
• Description: Callithrix jacchus cja-miR-146a-3p mature miRNA
• Sequence: 50 - CCUGUGAAAUUCAGUUCUUCA - 70
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596