Stem-loop cja-mir-7a

Accession

MI0032013

Description

Callithrix jacchus cja-mir-7a precursor miRNA

Sequence

23839 reads, 2282.0 reads per million, 1 experiments

ggauauuggccuaguucugugUGGAAGACUAGUGAUUUUGUUGUUuuuagauaacuaaauugaCAACAAAUCACAGUCUGCCAUAuggcacaggccaugcc
((....((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).))))))))..))

Structure

  auau      a  u        A     A       U      --     a 
gg    uggccu gu cugugUGG AGACU GUGAUUU GUUGUU  uuuag u
||    |||||| || |||||||| ||||| ||||||| ||||||  |||||  
cc    accgga ca gguAUACC UCUGA CACUAAA CAACag  aaauc a
  --gu      -  c        G     -       -      uu     a 

Annotation confidence High

Genome context

ref|NC_071442.1|: 95821599-95821699 [+]

Mature cja-miR-7a-5p

• Accession: MIMAT0039489
• Description: Callithrix jacchus cja-miR-7a-5p mature miRNA
• Sequence: 22 - UGGAAGACUAGUGAUUUUGUUGUU - 45
• Evidence: experimental ; Illumina [1]

Mature cja-miR-7a-3p

• Accession: MIMAT0061564
• Description: Callithrix jacchus cja-miR-7a-3p mature miRNA
• Sequence: 64 - CAACAAAUCACAGUCUGCCAUA - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857