Stem-loop cja-mir-34a

Accession

MI0032021

Description

Callithrix jacchus cja-mir-34a precursor miRNA

Sequence

26573 reads, 2543.0 reads per million, 1 experiments

cggcugugaguguuucuuUGGCAGUGUCUUAGCUGGUUGUUgugagcaauagugaaggaagcAAUCAGCAAGUAUACUGCCCUAgaagugcugcacguug
((((.((((((((((((..(((((((((((.((((((((((.....((....)).....))))))))))))).))))))))..))))))))).)))))))

Structure

    u   -         uU        -   A          gugag  a 
cggc gug aguguuucu  GGCAGUGU CUU GCUGGUUGUU     ca u
|||| ||| |||||||||  |||||||| ||| ||||||||||     ||  
guug cac ucgugaagA  CCGUCAUA GAA CGACUAAcga     gu a
    -   g         UC        U   -          aggaa  g 

Annotation confidence High

Genome context

ref|NC_071448.1|: 44109806-44109905 [-]

Mature cja-miR-34a-5p

• Accession: MIMAT0039496
• Description: Callithrix jacchus cja-miR-34a-5p mature miRNA
• Sequence: 19 - UGGCAGUGUCUUAGCUGGUUGUU - 41
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-34a-3p

• Accession: MIMAT0061566
• Description: Callithrix jacchus cja-miR-34a-3p mature miRNA
• Sequence: 63 - AAUCAGCAAGUAUACUGCCCUA - 84
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596