Stem-loop cja-mir-24-1

Accession

MI0032022

Description

Callithrix jacchus cja-mir-24-1 precursor miRNA

Sequence

25671 reads, 2457.0 reads per million, 1 experiments

ggccucccugggcucugccucccGUGCCUACUGAGCUGAAACACAguugguuugugcacacUGGCUCAGUUCAGCAGGAACAGgggucaagcccgcuuggagccc
(((.(((.((((((..(((.((.((.(((.(((((((((....((((..((....))..))))..))))))))).))).)).)))))..))))))...)))))).

Structure

-   c   --c      cu   u  c  G   A         AACA    ug  u 
 ggc ucc   ugggcu  gcc cc GU CCU CUGAGCUGA    CAgu  gu u
 ||| |||   ||||||  ||| || || ||| |||||||||    ||||  ||  
 ccg agg   gcccga  ugg gG CA GGA GACUUGACU    GUca  cg g
c   -   uuc      ac   -  A  A   C         --CG    ca  u 

Annotation confidence High

Genome context

ref|NC_071463.1|: 12279622-12279726 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cja-mir-24-1

Mature cja-miR-24-1-5p

• Accession: MIMAT0061567
• Description: Callithrix jacchus cja-miR-24-1-5p mature miRNA
• Sequence: 24 - GUGCCUACUGAGCUGAAACACA - 45
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-24-3p

• Accession: MIMAT0039497
• Description: Callithrix jacchus cja-miR-24-3p mature miRNA
• Sequence: 62 - UGGCUCAGUUCAGCAGGAACAG - 83
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596