miRBase entry: cja-mir-24-2

Stem-loop cja-mir-24-2


Accession
MI0032023
Description
Callithrix jacchus cja-mir-24-2 precursor miRNA


Sequence

25479 reads, 2438.0 reads per million, 1 experiments
cucCGGUGCCUACUGAGCUGAUAUCaguucucauuuuacacacUGGCUCAGUUCAGCAGGAACAGgag
((((.((.(((.(((((((((..(((((.............))))).))))))))).))).)).))))

Structure
    G  G   A         UA     ucuca 
cucC GU CCU CUGAGCUGA  UCagu     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacau 


Annotation confidence Medium
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Genome context
ref|NC_071442.1|: 77750874-77750941 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cja-mir-24-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-24-2-5p

Accession MIMAT0061568
Description Callithrix jacchus cja-miR-24-2-5p mature miRNA
Sequence 4 - CGGUGCCUACUGAGCUGAUAUC - 25
Evidence experimental
Illumina [1-2]

Mature cja-miR-24-3p

Accession MIMAT0039497
Description Callithrix jacchus cja-miR-24-3p mature miRNA
Sequence 44 - UGGCUCAGUUCAGCAGGAACAG - 65
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857

  2. PubMed ID: 28640911
    Evolution of microRNA in primates
    McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
    PLoS One (2017) 12:e0176596