miRBase entry: cja-mir-30d

Stem-loop cja-mir-30d

Accession

MI0032027

Description

Callithrix jacchus cja-mir-30d precursor miRNA

Sequence

gaaagucuguuguUGUAAACAUCCCCGACUGGAAGCuguaagauucaacuaagcuuucagucagauguuugcugcuaccggcuauuc
...((((.((.((.(((((((((...(((((((((((..............))))))))))).))))))))).)).)).))))....

Structure

-gaa    u  u  U         CCC           guaaga 
    aguc gu gu GUAAACAUC   GACUGGAAGCu      u
    |||| || || |||||||||   |||||||||||       
    ucgg ca cg cguuuguag   cugacuuucga      u
cuua    c  u  u         --a           aucaac

Annotation confidence Not enough data

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Genome context

chr16: 59862478-59862564 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-30d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-30d

Accession	MIMAT0039501
Description	Callithrix jacchus cja-miR-30d mature miRNA
Sequence	14 - UGUAAACAUCCCCGACUGGAAGC - 36
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857

PubMed ID: 28640911
Evolution of microRNA in primates
McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
PLoS One (2017) 12:e0176596