Stem-loop cja-mir-30b

Accession

MI0032028

Description

Callithrix jacchus cja-mir-30b precursor miRNA

Sequence

15970 reads, 1528.0 reads per million, 1 experiments

ccgaguuucaguucaUGUAAACAUCCUACACUCAGCUguaauacauggauuggCUGAGAGGUGGAUGUUUACUUCagcugacuugg
(((((..((((((...((((((((((.((.((((((((............))))))))..))))))))))))...)))))))))))

Structure

     uu      caU          U  -A        uaaua 
ccgag  ucaguu   GUAAACAUCC AC  CUCAGCUg     c
|||||  ||||||   |||||||||| ||  ||||||||      
gguuc  agucga   CAUUUGUAGG UG  GAGUCggu     a
     --      CUU          -  GA        uaggu 

Annotation confidence High

Genome context

ref|NC_071457.1|: 60925351-60925436 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-30b

Mature cja-miR-30b-5p

• Accession: MIMAT0039502
• Description: Callithrix jacchus cja-miR-30b-5p mature miRNA
• Sequence: 16 - UGUAAACAUCCUACACUCAGCU - 37
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-30b-3p

• Accession: MIMAT0061570
• Description: Callithrix jacchus cja-miR-30b-3p mature miRNA
• Sequence: 54 - CUGAGAGGUGGAUGUUUACUUC - 75
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596