Stem-loop cja-mir-30e

Accession

MI0032030

Description

Callithrix jacchus cja-mir-30e precursor miRNA

Sequence

40565 reads, 3882.0 reads per million, 1 experiments

ggcagucuuugcuacUGUAAACAUCCUUGACUGGAAGCUguaagguguugagaggagCUUUCAGUCGGAUGUUUACAGCggcaggcugcc
((((((((..(((.((((((((((((..(((((((((((................))))))))))))))))))))))).)))))))))))

Structure

        uu   a            UU           guaaggu 
ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGCU       g
||||||||  ||| ||||||||||||  |||||||||||        
ccgucgga  cgg GACAUUUGUAGG  CUGACUUUCga       u
        --   C            --           ggagagu 

Annotation confidence High

Genome context

ref|NC_071448.1|: 74354127-74354216 [+]

Mature cja-miR-30e-5p

• Accession: MIMAT0039504
• Description: Callithrix jacchus cja-miR-30e-5p mature miRNA
• Sequence: 16 - UGUAAACAUCCUUGACUGGAAGCU - 39
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-30e-3p

• Accession: MIMAT0061571
• Description: Callithrix jacchus cja-miR-30e-3p mature miRNA
• Sequence: 58 - CUUUCAGUCGGAUGUUUACAGC - 79
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596