Stem-loop cja-mir-19b-1

Accession

MI0032036

Description

Callithrix jacchus cja-mir-19b-1 precursor miRNA

Sequence

48533 reads, 4645.0 reads per million, 1 experiments

acugaacacuguucuaugguuAGUUUUGCAGGUUUGCAUCCAGcugugugauauucugcUGUGCAAAUCCAUGCAAAACUGAcugugguagugaaaagu
(((...(((((..(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))))))))...)))

Structure

   gaa     uu                 -  -      UC    ugugu 
acu   cacug  cuaugguuAGUUUUGCA GG UUUGCA  CAGc     g
|||   |||||  ||||||||||||||||| || ||||||  ||||     a
uga   gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
   aaa     --                 A  U      --    ucuua 

Annotation confidence High

Genome context

ref|NC_071442.1|: 6487415-6487513 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cja-mir-19b-1

Mature cja-miR-19b-5p

• Accession: MIMAT0061572
• Description: Callithrix jacchus cja-miR-19b-5p mature miRNA
• Sequence: 22 - AGUUUUGCAGGUUUGCAUCCAG - 43
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-19b-3p

• Accession: MIMAT0039509
• Description: Callithrix jacchus cja-miR-19b-3p mature miRNA
• Sequence: 60 - UGUGCAAAUCCAUGCAAAACUGA - 82
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596