Stem-loop cja-mir-499a

Accession

MI0032037

Description

Callithrix jacchus cja-mir-499a precursor miRNA

Sequence

310 reads, 30.0 reads per million, 1 experiments

ggcccuguccuucaccccugcccuguccccugcgccuugggcgggcggccgUUAAGACUUGCAGUGAUGUUUAacuccucuccacguGAACAUCACAGCAAGUCUGUGcugcuucccgucccuacgcugccugggcaggguuugggggcaaggggugggagcc
((((((((((((..((((((((((((((.(.(((....(((((((.(((.((..((((((((.((((((((((.............)))))))))).))))))))..)).))).)))))))...))).)...)))))))))..)))))..))))))))).)))

Structure

   -         ca     --         --c u   ccuu       c   c  UA        A          acucc 
ggc ccuguccuu  ccccu  gcccugucc   c gcg    gggcggg ggc gU  AGACUUGC GUGAUGUUUA     u
||| |||||||||  |||||  |||||||||   | |||    ||||||| ||| ||  |||||||| ||||||||||     c
ccg gggugggga  ggggg  ugggacggg   g cgc    ccugccc ucg cG  UCUGAACG CACUACAAGu     u
   a         ac     uu         ucc u   -auc       u   u  UG        A          gcacc 

Annotation confidence High

Genome context

ref|NC_071446.1|: 2198045-2198207 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-499a

Mature cja-miR-499a-5p

• Accession: MIMAT0039510
• Description: Callithrix jacchus cja-miR-499a-5p mature miRNA
• Sequence: 52 - UUAAGACUUGCAGUGAUGUUUA - 73
• Evidence: experimental ; Illumina [1]

Mature cja-miR-499a-3p

• Accession: MIMAT0061573
• Description: Callithrix jacchus cja-miR-499a-3p mature miRNA
• Sequence: 88 - GAACAUCACAGCAAGUCUGUG - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857