Stem-loop cja-mir-155

Accession

MI0032038

Description

Callithrix jacchus cja-mir-155 precursor miRNA

Literature search

1 open access papers mention cja-mir-155
(3 sentences)

Sequence

770718 reads, 73762.0 reads per million, 1 experiments

gaguucugaaggcuguaugcugUUAAUGCUAAUCGUGAUAGGGGUUuuuaccuccaacugaCUCCUACAUGUUAGCAUUAACAggguaugaugccuguuacuagcauuc
.(((.....((((.((((.(((((((((((((.((((.((((((((.............))))))))))))))))))))))))).))))...))))...))).......

Structure

------g   ucuga    --u    g             U    A        uuuac 
       agu     aggc   guau cugUUAAUGCUAA CGUG UAGGGGUU     c
       |||     ||||   |||| ||||||||||||| |||| ||||||||     u
       uca     uccg   uaug gACAAUUACGAUU GUAC AUCCUCag     c
cuuacga   --uug    uag    g             -    -        ucaac 

Annotation confidence High

Genome context

ref|NC_071462.1|: 30002300-30002408 [+]

Mature cja-miR-155-5p

• Accession: MIMAT0039511
• Description: Callithrix jacchus cja-miR-155-5p mature miRNA
• Sequence: 23 - UUAAUGCUAAUCGUGAUAGGGGUU - 46
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-155-3p

• Accession: MIMAT0061574
• Description: Callithrix jacchus cja-miR-155-3p mature miRNA
• Sequence: 62 - CUCCUACAUGUUAGCAUUAACA - 83
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596