miRBase entry: cja-mir-27a

Stem-loop cja-mir-27a

Accession

MI0032046

Description

Callithrix jacchus cja-mir-27a precursor miRNA

Sequence

gaugccgccuggggacgggguggcagagagccccgacgccugugccuggccugaggagcagggcuuagcugcuugugagcaggguucacuccaagucaugUUCACAGUGGCUAAGUUCCGCcccccaggcccucaccuccuccggcccugccgccugucccccaaugcugccuguc
...((.((..(((((((((.((((((.(.(((..((.(...(((...((((((.((.((.(((((((((((((.(((((((((.((......)).)).)))))))))))))))))))).)).)).))))))..)))...))).)))))))))))))))))))....)).)).....

Structure

--gau  c  --cu         g      a a   cc  c ccu   ccu      a  a  a             u       -  g  ca 
     gc gc    ggggacggg uggcag g gcc  ga g   gug   ggccug gg gc gggcuuagcugcu gugagca gg uu  c
     || ||    ||||||||| |||||| | |||  || |   |||   |||||| || || ||||||||||||| ||||||| || ||   
     cg cg    ccccugucc gccguc c cgg  cu c   cac   ccggac cc CG CUUGAAUCGGUGA CACUUgu cu aa  u
cuguc  u  uaac         -      - -   -c  - cuc   -uc      c  c  C             -       a  g  cc

Annotation confidence Not enough data

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Genome context

chr22: 13069297-13069472 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cja-mir-27a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-27a

Accession	MIMAT0039518
Description	Callithrix jacchus cja-miR-27a mature miRNA
Sequence	101 - UUCACAGUGGCUAAGUUCCGC - 121
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857

PubMed ID: 28640911
Evolution of microRNA in primates
McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
PLoS One (2017) 12:e0176596