Stem-loop cja-mir-27a

Accession

MI0032046

Description

Callithrix jacchus cja-mir-27a precursor miRNA

Literature search

1 open access papers mention cja-mir-27a
(2 sentences)

Sequence

52420 reads, 5017.0 reads per million, 1 experiments

gaugccgccuggggacgggguggcagagagccccgacgccugugccuggccugaggagcAGGGCUUAGCUGCUUGUGAGCAggguucacuccaagucaugUUCACAGUGGCUAAGUUCCGCcccccaggcccucaccuccuccggcccugccgccugucccccaaugcugccuguc
...((.((..(((((((((.((((((.(.(((..((.(...(((...((((((.((.((.(((((((((((((.(((((((((.((......)).)).)))))))))))))))))))).)).)).))))))..)))...))).)))))))))))))))))))....)).)).....

Structure

--gau  c  --cu         g      a a   cc  c ccu   ccu      a  a  A             U       -  g  ca 
     gc gc    ggggacggg uggcag g gcc  ga g   gug   ggccug gg gc GGGCUUAGCUGCU GUGAGCA gg uu  c
     || ||    ||||||||| |||||| | |||  || |   |||   |||||| || || ||||||||||||| ||||||| || ||   
     cg cg    ccccugucc gccguc c cgg  cu c   cac   ccggac cc CG CUUGAAUCGGUGA CACUUgu cu aa  u
cuguc  u  uaac         -      - -   -c  - cuc   -uc      c  c  C             -       a  g  cc 

Annotation confidence High

Genome context

ref|NC_071463.1|: 12279747-12279922 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cja-mir-27a

Mature cja-miR-27a-5p

• Accession: MIMAT0061578
• Description: Callithrix jacchus cja-miR-27a-5p mature miRNA
• Sequence: 60 - AGGGCUUAGCUGCUUGUGAGCA - 81
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-27a-3p

• Accession: MIMAT0039518
• Description: Callithrix jacchus cja-miR-27a-3p mature miRNA
• Sequence: 101 - UUCACAGUGGCUAAGUUCCGC - 121
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596