Stem-loop cja-mir-27b

Accession

MI0032047

Description

Callithrix jacchus cja-mir-27b precursor miRNA

Literature search

1 open access papers mention cja-mir-27b
(1 sentences)

Sequence

22585 reads, 2162.0 reads per million, 1 experiments

ggaagaugcucaccggcccuuuauuuaugcccagcgaugaccucucugacaaggugcAGAGCUUAGCUGAUUGGUGAACAgugauugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCAccugaagagaaggugagauggggacaguuaaguuggagccgcuggggcagaggcc
((....(((((..((((((((((.((.(.((((....(.((((((((....(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))..)))).)))).)..)))).).)).))))..)).))))...)))))....))

Structure

  aaga     -ac    -  --    u  a g    gcga g    -    gaca                 G    G       ugau   u 
gg    ugcuc   cggc cc  uuua uu u ccca    u accu cucu    aggugcAGAGCUUAGCU AUUG UGAACAg    ugg  
||    |||||   |||| ||  |||| || | ||||    | |||| ||||    ||||||||||||||||| |||| |||||||    ||| u
cc    acggg   gccg gg  gaau ga a gggu    a ugga gaga    uccACGUCUUGAAUCGG UGAC ACUUguu    gcc  
  ggag     guc    a  uu    u  c g    --ag g    a    --ag                 -    -       --uc   u 

Annotation confidence High

Genome context

ref|NC_071442.1|: 77750252-77750427 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cja-mir-27b

Mature cja-miR-27b-5p

• Accession: MIMAT0061579
• Description: Callithrix jacchus cja-miR-27b-5p mature miRNA
• Sequence: 58 - AGAGCUUAGCUGAUUGGUGAACA - 80
• Evidence: experimental ; Illumina [1-2]

Mature cja-miR-27b-3p

• Accession: MIMAT0039519
• Description: Callithrix jacchus cja-miR-27b-3p mature miRNA
• Sequence: 100 - UUCACAGUGGCUAAGUUCUGCA - 121
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596